Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs57138123 chr7:62067892 T/A 6.21E-7 366 23.6 20.23 11.27 KM Plot
CRC rs57483700 chr19:42081529 T/TG 3.04E-7 366 22.83 19.6 13.35 KM Plot
CRC rs57739501 chr7:57732164 C/CA 1.77E-6 373 11.92 20.38 23.37 KM Plot
CRC rs58023703 chr7:57786595 C/A 1.91E-6 371 23.37 20.58 11.92 KM Plot
CRC rs5884481 chr7:62029838 TC/T 7.18E-7 362 22.83 20.05 11.27 KM Plot
CRC rs59057233 chr7:62050247 T/A 7.41E-7 367 23.83 20.23 11.27 KM Plot
CRC rs59640647 chr7:62051041 T/C 7.41E-7 367 23.83 20.23 11.27 KM Plot
CRC rs59791525 chr7:57785045 C/A 1.82E-6 371 23.6 20.47 11.92 KM Plot
CRC rs60579751 chr7:57786684 T/G 1.91E-6 371 23.37 20.58 11.92 KM Plot
CRC rs60996392 chr5:54673841 T/A 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs6124332 chr20:39863539 C/T 8.23E-7 374 22.4 22.33 7.07 KM Plot
CRC rs62028403 chr15:76702721 T/C 1.11E-6 370 22.78 22.33 7.6 KM Plot
CRC rs62357601 chr5:40849719 G/A 3.03E-5 368 22.4 21.3 26.1 KM Plot
CRC rs62357603 chr5:40850283 G/A 3.01E-5 368 22.38 21.37 26.1 KM Plot
CRC rs62357605 chr5:40852060 C/T 3.18E-5 367 22.37 21.37 26.1 KM Plot